PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF054400100CFD_t1
Common NameTRAES_3BF054400100CFD_c1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family B3
Protein Properties Length: 334aa    MW: 38414.4 Da    PI: 10.4617
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF054400100CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B369.35.1e-22351151298
                              HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                       B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                               + r+++p +fa+++ g+   ++t++l +++g +++v++  +k+ ++ vl +GWk F+ka++L++gDf+vFk+dg+s+   +v +f
  TRAES3BF054400100CFD_t1  35 FHERMIIPDRFAQHFRGQ--IGQTIKLASRHGYTFDVQI--TKNLEKLVLDSGWKAFAKAHNLRTGDFLVFKYDGHSQL--KVLIF 114
                              4568********888878..6779***************..********************************997777..78777 PP

                              - CS
                       B3  98 r 98 
                               
  TRAES3BF054400100CFD_t1 115 G 115
                              5 PP

2B353.93.3e-172413308100
                              -HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE. CS
                       B3   8 sdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefe 91 
                              s ++k++ l +++k+ae +   +  e +++t  + +g++Wev++++++++++  l +GW +Fv+ n+L+ gD+++F+l ++ ++  
  TRAES3BF054400100CFD_t1 241 SIYGKTRTLGISRKYAEVYlPFV--E-QMVT-LQHHGKKWEVRCCVKNRKSK-RLMRGWMHFVRGNNLQLGDVCLFELLRNkKKYV 321
                              556788899*******9996333..2.2455.556*********88544444.3667*********************99989999 PP

                              .EEEEE-SS CS
                       B3  92 lvvkvfrks 100
                              ++v+++rks
  TRAES3BF054400100CFD_t1 322 MNVHIIRKS 330
                              999999985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.7E-2421119IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.47E-2422119IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.02924117IPR003340B3 DNA binding domain
CDDcd100172.08E-2225114No hitNo description
SMARTSM010191.1E-1327117IPR003340B3 DNA binding domain
PfamPF023621.3E-1927114IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.9E-22226330IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.53E-21226330IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.971234330IPR003340B3 DNA binding domain
CDDcd100171.12E-17236328No hitNo description
SMARTSM010191.4E-12237330IPR003340B3 DNA binding domain
PfamPF023621.9E-15239329IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MSKPWKKRKE LDEHRYWNHT EEQDKRFFKV MIGDFHERMI IPDRFAQHFR GQIGQTIKLA  60
SRHGYTFDVQ ITKNLEKLVL DSGWKAFAKA HNLRTGDFLV FKYDGHSQLK VLIFGPSGCE  120
KTCNLKKNAA PGKEWWGNTA GMVNTCHDLP MKFPHSGRKI KPSTDSSRQG NDIINVSSSS  180
SASDSAGGVS SSEDDHSLSS CILAKGTLLN LNHVQKKQLE EKIRAINSEI PIYGCVISKS  240
SIYGKTRTLG ISRKYAEVYL PFVEQMVTLQ HHGKKWEVRC CVKNRKSKRL MRGWMHFVRG  300
NNLQLGDVCL FELLRNKKKY VMNVHIIRKS LYKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004982411.11e-101PREDICTED: putative B3 domain-containing protein Os03g0621600
SwissprotQ851V51e-103Y3216_ORYSJ; Putative B3 domain-containing protein Os03g0621600
TrEMBLA0A077S7D40.0A0A077S7D4_WHEAT; Uncharacterized protein
STRINGBGIOSGA013142-PA1e-102(Oryza sativa Indica Group)
STRINGORGLA03G0244700.11e-101(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29012985
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.11e-24B3 family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]